optimized model parameters from the simulation of different algorithms Search Results


optimizer version 5.6.3 solver  (Gurobi Optimization)
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Gurobi Optimization optimizer version 5.6.3 solver
Optimizer Version 5.6.3 Solver, supplied by Gurobi Optimization, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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ansys version 18.1  (ANSYS inc)
90
ANSYS inc ansys version 18.1
Ansys Version 18.1, supplied by ANSYS inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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ansys version 18.1 - by Bioz Stars, 2026-05
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simulation model  (COMSOL Inc)
90
COMSOL Inc simulation model
Simulation Model, supplied by COMSOL Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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simulation model - by Bioz Stars, 2026-05
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optimizer version 5.6.3  (Gurobi Optimization)
90
Gurobi Optimization optimizer version 5.6.3
Optimizer Version 5.6.3, supplied by Gurobi Optimization, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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optimizer version 5.6.3 - by Bioz Stars, 2026-05
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insight/ discover molecular modeling package  (Biosym Technologies)
90
Biosym Technologies insight/ discover molecular modeling package
Insight/ Discover Molecular Modeling Package, supplied by Biosym Technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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insight/ discover molecular modeling package - by Bioz Stars, 2026-05
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packing optimization for molecular dynamics simulations packmol program  (Molecular Dynamics Inc)
90
Molecular Dynamics Inc packing optimization for molecular dynamics simulations packmol program
Packing Optimization For Molecular Dynamics Simulations Packmol Program, supplied by Molecular Dynamics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/packing optimization for molecular dynamics simulations packmol program/product/Molecular Dynamics Inc
Average 90 stars, based on 1 article reviews
packing optimization for molecular dynamics simulations packmol program - by Bioz Stars, 2026-05
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optimized atomistic schwarzite model  (Molecular Dynamics Inc)
90
Molecular Dynamics Inc optimized atomistic schwarzite model
Optimized Atomistic Schwarzite Model, supplied by Molecular Dynamics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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optimized atomistic schwarzite model - by Bioz Stars, 2026-05
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iaf1260 genome-scale metabolic model  (Gurobi Optimization)
90
Gurobi Optimization iaf1260 genome-scale metabolic model
Frequency distribution of the GPR associations in the <t>iAF1260</t> model with respect to: a) number of subunits per enzyme complex; b) number of isozymes per reaction; c) number of reactions catalyzed per enzyme.
Iaf1260 Genome Scale Metabolic Model, supplied by Gurobi Optimization, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/iaf1260 genome-scale metabolic model/product/Gurobi Optimization
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iaf1260 genome-scale metabolic model - by Bioz Stars, 2026-05
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zemax simulation model  (ZEMAX Development Corporation)
90
ZEMAX Development Corporation zemax simulation model
Frequency distribution of the GPR associations in the <t>iAF1260</t> model with respect to: a) number of subunits per enzyme complex; b) number of isozymes per reaction; c) number of reactions catalyzed per enzyme.
Zemax Simulation Model, supplied by ZEMAX Development Corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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open databases c2db  (Molecular Dynamics Inc)
90
Molecular Dynamics Inc open databases c2db
Frequency distribution of the GPR associations in the <t>iAF1260</t> model with respect to: a) number of subunits per enzyme complex; b) number of isozymes per reaction; c) number of reactions catalyzed per enzyme.
Open Databases C2db, supplied by Molecular Dynamics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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dynamics flexible fitting (mdff) program  (Molecular Dynamics Inc)
90
Molecular Dynamics Inc dynamics flexible fitting (mdff) program
Frequency distribution of the GPR associations in the <t>iAF1260</t> model with respect to: a) number of subunits per enzyme complex; b) number of isozymes per reaction; c) number of reactions catalyzed per enzyme.
Dynamics Flexible Fitting (Mdff) Program, supplied by Molecular Dynamics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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autodesk inventor 10  (Autodesk Inc)
90
Autodesk Inc autodesk inventor 10
Frequency distribution of the GPR associations in the <t>iAF1260</t> model with respect to: a) number of subunits per enzyme complex; b) number of isozymes per reaction; c) number of reactions catalyzed per enzyme.
Autodesk Inventor 10, supplied by Autodesk Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Frequency distribution of the GPR associations in the iAF1260 model with respect to: a) number of subunits per enzyme complex; b) number of isozymes per reaction; c) number of reactions catalyzed per enzyme.

Journal: PLoS Computational Biology

Article Title: Stoichiometric Representation of Gene–Protein–Reaction Associations Leverages Constraint-Based Analysis from Reaction to Gene-Level Phenotype Prediction

doi: 10.1371/journal.pcbi.1005140

Figure Lengend Snippet: Frequency distribution of the GPR associations in the iAF1260 model with respect to: a) number of subunits per enzyme complex; b) number of isozymes per reaction; c) number of reactions catalyzed per enzyme.

Article Snippet: Unless otherwise stated, all simulations were performed using the iAF1260 genome-scale metabolic model for E. coli [ ] and the Gurobi solver (version 6.5).

Techniques:

Difference in simulation results for: A) pFBA and B) gene-pFBA. Simulations performed using the iAF1260 model with default model conditions (aerobic growth on glucose minimal medium with a maximum glucose uptake rate of 10 mmol/gDW/h). The values of the respective objective functions for this particular subsystem are indicated.

Journal: PLoS Computational Biology

Article Title: Stoichiometric Representation of Gene–Protein–Reaction Associations Leverages Constraint-Based Analysis from Reaction to Gene-Level Phenotype Prediction

doi: 10.1371/journal.pcbi.1005140

Figure Lengend Snippet: Difference in simulation results for: A) pFBA and B) gene-pFBA. Simulations performed using the iAF1260 model with default model conditions (aerobic growth on glucose minimal medium with a maximum glucose uptake rate of 10 mmol/gDW/h). The values of the respective objective functions for this particular subsystem are indicated.

Article Snippet: Unless otherwise stated, all simulations were performed using the iAF1260 genome-scale metabolic model for E. coli [ ] and the Gurobi solver (version 6.5).

Techniques: